Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000150.1 Corchorus olitorius cultivar O-4 contig00150, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 819

Length: 1365
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.29


Found at i:756 original size:46 final size:46

Alignment explanation


    Indices: 697--929  Score: 394
    Period size: 46  Copynumber: 5.1  Consensus size: 46

        687 GGCAAAGCAG

                 *  *                           *       * 
        697 AATTGGTCCTGATGGTGTGAAGAAATTTATACCATCAGGATGGAGA
          1 AATTGATCTTGATGGTGTGAAGAAATTTATACCATCTGGATGGAAA

                                                **      * 
        743 AATTGATCTTGATGGTGTGAAGAAATTTATACCATCAAGATGGAGA
          1 AATTGATCTTGATGGTGTGAAGAAATTTATACCATCTGGATGGAAA

                                                          
        789 AATTGATCTTGATGGTGTGAAGAAATTTATACCATCTGGATGGAAA
          1 AATTGATCTTGATGGTGTGAAGAAATTTATACCATCTGGATGGAAA

                                                          
        835 AATTGATCTTGATGGTGTGAAGAAATTTATACCATCTGGATGGAAA
          1 AATTGATCTTGATGGTGTGAAGAAATTTATACCATCTGGATGGAAA

                    *                                     
        881 AATTGATCCTGATGGTGTGAAGAAATTTATACCATCTGGATGGAAA
          1 AATTGATCTTGATGGTGTGAAGAAATTTATACCATCTGGATGGAAA

               
        927 AAT
          1 AAT

        930 CACAAAGAGC


Statistics
Matches: 180,  Mismatches: 7, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  46  180  1.00

ACGTcount: A:0.35, C:0.09, G:0.24, T:0.31


Consensus pattern (46 bp):   
AATTGATCTTGATGGTGTGAAGAAATTTATACCATCTGGATGGAAA

Done.