Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001500.1 Corchorus olitorius cultivar O-4 contig01500, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 655

Length: 1092
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31


Found at i:977 original size:20 final size:20

Alignment explanation


    Indices: 936--974  Score: 51
    Period size: 20  Copynumber: 1.9  Consensus size: 20

        926 TGAAATTGTT

                         * *    
        936 AATAATAAAAATATTGTAAG
          1 AATAATAAAAATACTATAAG

                               
        956 AATAATAAAAAGTACTATA
          1 AATAATAAAAA-TACTATA

        975 GAAAGAATTG


Statistics
Matches: 16,  Mismatches: 2, Indels: 1
        0.84            0.11        0.05

Matches are distributed among these distances:
  20   11  0.69
  21    5  0.31

ACGTcount: A:0.62, C:0.03, G:0.08, T:0.28


Consensus pattern (20 bp):   
AATAATAAAAATACTATAAG
Done.