Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015000.1 Corchorus olitorius cultivar O-4 contig15033, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30146

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3221--3245
13
1.9
13
100
0
50
0
96
4
0
0.24
14408--14459
26
2.0
26
100
0
104
19
15
26
38
1.91
15795--15877
34
2.3
36
83
6
107
21
18
13
46
1.82
19801--19871
35
2.0
35
94
0
124
16
26
5
50
1.67
21807--21858
25
2.0
26
96
3
97
40
7
0
51
1.30
23118--23346
30
7.6
30
93
0
350
30
19
20
29
1.97
23297--23600
62
4.8
65
86
11
368
34
16
15
33
1.90
23327--23600
96
2.9
96
90
6
407
35
16
14
33
1.89
28871--28910
17
2.4
17
91
0
62
20
10
35
35
1.86
28914--28941
13
2.2
13
100
0
56
14
7
50
28
1.69

Tables:   1

The End!