Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015002.1 Corchorus olitorius cultivar O-4 contig15035, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3254
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34


Found at i:1627 original size:11 final size:11

Alignment explanation


    Indices: 1608--1637  Score: 51
    Period size: 11  Copynumber: 2.7  Consensus size: 11

       1598 CCATGGTCAA

                       
       1608 GTCGCGATTCG
          1 GTCGCGATTCG

                *      
       1619 GTCGTGATTCG
          1 GTCGCGATTCG

                    
       1630 GTCGCGAT
          1 GTCGCGAT

       1638 CGTCGCACTA


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  11   17  1.00

ACGTcount: A:0.10, C:0.23, G:0.37, T:0.30


Consensus pattern (11 bp):   
GTCGCGATTCG
Done.