Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015005.1 Corchorus olitorius cultivar O-4 contig15038, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6159
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32


Found at i:5877 original size:48 final size:48

Alignment explanation


    Indices: 5802--5931  Score: 149
    Period size: 49  Copynumber: 2.7  Consensus size: 48

       5792 GAGCGTGCCA

                     *   *         *                  *      
       5802 ATCAATTTTATC-CAAAAATTGATAAAAAGTGCAA-TGAAAATTAAAAG
          1 ATCAATTTTGTCTTAAAAATTGAGAAAAAGTGCAAGT-AAAAATAAAAG

                                                             
       5849 ATCAATTTTGTCTTAAAAATTGAGAAAAAGATGCAAGTAAAAATAAAAG
          1 ATCAATTTTGTCTTAAAAATTGAGAAAAAG-TGCAAGTAAAAATAAAAG

            * *                        *       
       5898 TTAAATTTTGT-TGTAAAAATTGAGAATAAGTGCA
          1 ATCAATTTTGTCT-TAAAAATTGAGAAAAAGTGCA

       5932 GGAAATGTAA


Statistics
Matches: 72,  Mismatches: 7, Indels: 7
        0.84            0.08        0.08

Matches are distributed among these distances:
  47   11  0.15
  48   20  0.28
  49   40  0.56
  50    1  0.01

ACGTcount: A:0.50, C:0.06, G:0.14, T:0.30


Consensus pattern (48 bp):   
ATCAATTTTGTCTTAAAAATTGAGAAAAAGTGCAAGTAAAAATAAAAG

Done.