Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015006.1 Corchorus olitorius cultivar O-4 contig15039, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57440

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5832--5881
3
16.7
3
95
0
91
68
2
0
30
1.01
15494--15561
32
2.1
33
86
5
93
61
22
10
5
1.49
15559--15594
11
3.3
11
96
0
63
72
8
2
16
1.21
20566--20630
31
2.1
30
88
2
94
52
18
6
23
1.67
20668--20748
2
40.0
2
75
24
73
48
7
0
44
1.31
27133--27163
15
2.1
15
100
0
62
58
12
0
29
1.35
27596--27632
6
6.2
6
90
0
56
48
18
0
32
1.49
30843--31280
178
2.5
179
81
3
501
34
13
15
35
1.87
32068--32370
164
1.8
166
88
5
463
41
14
11
32
1.81
33247--33276
15
2.0
15
93
0
51
36
20
16
26
1.93
33286--35148
213
9.0
196
75
13
1085
37
23
16
21
1.94
33481--35229
213
8.3
212
81
6
1834
37
23
17
22
1.94
33481--35242
426
4.2
425
82
5
2056
37
23
16
22
1.94
34079--34148
33
2.1
33
84
5
88
28
17
17
37
1.92
33202--35242
840
2.4
836
82
6
2433
37
23
17
22
1.94
35672--35742
31
2.2
31
82
10
79
23
9
18
47
1.78
35738--35791
28
1.9
28
88
0
81
12
5
27
53
1.61
43537--44350
270
3.0
269
96
1
1495
32
14
17
35
1.90
45007--45055
15
3.3
15
72
11
55
4
44
4
46
1.41
45001--45069
30
2.3
30
97
0
129
7
43
7
42
1.60
45016--45064
15
3.3
15
72
11
55
4
44
8
42
1.53
45648--45697
21
2.3
21
86
10
66
0
4
14
82
0.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55415--55447
6
5.5
6
100
0
66
36
18
30
15
1.91

Tables:   1

The End!