Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015007.1 Corchorus olitorius cultivar O-4 contig15040, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 934

Length: 1557
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.44


Found at i:406 original size:19 final size:19

Alignment explanation


    Indices: 382--419  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        372 ATCAAGTTTA

                               
        382 AAAGTTAAAATAAGTTGGC
          1 AAAGTTAAAATAAGTTGGC

                               
        401 AAAGTTAAAATAAGTTGGC
          1 AAAGTTAAAATAAGTTGGC

        420 TAATCATTAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.47, C:0.05, G:0.21, T:0.26


Consensus pattern (19 bp):   
AAAGTTAAAATAAGTTGGC

Found at i:1026 original size:32 final size:32

Alignment explanation


    Indices: 979--1039  Score: 97
    Period size: 32  Copynumber: 1.9  Consensus size: 32

        969 TGTAAAACTT

                                            
        979 TTGAATCGACTATTATACCCGTATTTTTCTAA
          1 TTGAATCGACTATTATACCCGTATTTTTCTAA

                                 *        
       1011 TTGAATCGA-TCATTATACCCTTATTTTTC
          1 TTGAATCGACT-ATTATACCCGTATTTTTC

       1040 CAAACATATT


Statistics
Matches: 27,  Mismatches: 1, Indels: 2
        0.90            0.03        0.07

Matches are distributed among these distances:
  31    1  0.04
  32   26  0.96

ACGTcount: A:0.26, C:0.20, G:0.08, T:0.46


Consensus pattern (32 bp):   
TTGAATCGACTATTATACCCGTATTTTTCTAA
Done.