Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001501.1 Corchorus olitorius cultivar O-4 contig01501, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1797
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23


Found at i:1545 original size:12 final size:12

Alignment explanation


    Indices: 1528--1552  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       1518 GGGTGGCGGC

                        
       1528 ACTAGAAGAAAA
          1 ACTAGAAGAAAA

                        
       1540 ACTAGAAGAAAA
          1 ACTAGAAGAAAA

             
       1552 A
          1 A

       1553 GAAAATTATC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.68, C:0.08, G:0.16, T:0.08


Consensus pattern (12 bp):   
ACTAGAAGAAAA
Done.