Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015010.1 Corchorus olitorius cultivar O-4 contig15043, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3416
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:3063 original size:19 final size:19

Alignment explanation


    Indices: 3039--3076  Score: 67
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       3029 AAGAGTAAAT

                          *    
       3039 TATAAATTTATTAACTTAA
          1 TATAAATTTATTAAATTAA

                               
       3058 TATAAATTTATTAAATTAA
          1 TATAAATTTATTAAATTAA

       3077 ATTTAGGTGA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47


Consensus pattern (19 bp):   
TATAAATTTATTAAATTAA
Done.