Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015017.1 Corchorus olitorius cultivar O-4 contig15050, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2970
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.32


Found at i:227 original size:12 final size:13

Alignment explanation


    Indices: 198--241  Score: 54
    Period size: 13  Copynumber: 3.5  Consensus size: 13

        188 ATTTTATTAC

                   *     
        198 TGTTTTATTAAAT
          1 TGTTTTAATAAAT

                         
        211 TGTTTTAA-AAAT
          1 TGTTTTAATAAAT

            *    *       
        223 GGTTTAAATAAAT
          1 TGTTTTAATAAAT

                  
        236 TGTTTT
          1 TGTTTT

        242 GGGTGCATGA


Statistics
Matches: 25,  Mismatches: 5, Indels: 2
        0.78            0.16        0.06

Matches are distributed among these distances:
  12   10  0.40
  13   15  0.60

ACGTcount: A:0.34, C:0.00, G:0.11, T:0.55


Consensus pattern (13 bp):   
TGTTTTAATAAAT
Done.