Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015018.1 Corchorus olitorius cultivar O-4 contig15051, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2652
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:2396 original size:69 final size:69

Alignment explanation


    Indices: 2243--2460  Score: 350
    Period size: 69  Copynumber: 3.2  Consensus size: 69

       2233 ACAACTCCTA

                                                                             
       2243 GACAGGACTTGGGTAACTCCTGCCCAGGTCTTGTCCTGTAATTTGCGTTCCTC-A-AGCACAAGT
          1 GACAGGACTTGGGTAACTCCTGCCCAGGTCTTGTCCTGTAATTTGCGTTCCTCAACAGCACAAGT

                
       2306 CCGG
         66 CCGG

                                *                          *  *              
       2310 GACAGGACTTGGGTAACTCCCGCCCAGGTCTTGTCCTGTAATTTGCGCTCTTCAACAGCACAAGT
          1 GACAGGACTTGGGTAACTCCTGCCCAGGTCTTGTCCTGTAATTTGCGTTCCTCAACAGCACAAGT

                
       2375 CCGG
         66 CCGG

                                                     *     *            *    
       2379 GACAGGACTTGGGTAACTCCTGCCCAGGTCTTGTCCTGTATTTTTGCATTCCTCAACAGCCCAAG
          1 GACAGGACTTGGGTAACTCCTGCCCAGGTCTTGTCCTGTA-ATTTGCGTTCCTCAACAGCACAAG

               * 
       2444 TCCTG
         65 TCCGG

                        
       2449 GACAGGACTTGG
          1 GACAGGACTTGG

       2461 CCAAGATCTG


Statistics
Matches: 138,  Mismatches: 10, Indels: 3
        0.91            0.07        0.02

Matches are distributed among these distances:
  67   50  0.36
  68    1  0.01
  69   52  0.38
  70   35  0.25

ACGTcount: A:0.20, C:0.29, G:0.25, T:0.27


Consensus pattern (69 bp):   
GACAGGACTTGGGTAACTCCTGCCCAGGTCTTGTCCTGTAATTTGCGTTCCTCAACAGCACAAGT
CCGG
Done.