Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015020.1 Corchorus olitorius cultivar O-4 contig15053, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3370
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37


Found at i:2220 original size:31 final size:29

Alignment explanation


    Indices: 2182--2255  Score: 80
    Period size: 31  Copynumber: 2.6  Consensus size: 29

       2172 TTAATGCCCT

                                      *    
       2182 TTTTGCCCCCTGAACTTTTACGATTTTGACG
          1 TTTTGCCCCCTGAACTTTTA--ATTTGGACG

                    *  *               * 
       2213 TTTTGCCCTCTAAAC-TTTAATTTGGATG
          1 TTTTGCCCCCTGAACTTTTAATTTGGACG

                            
       2241 -TTTGCCCCCTGAACT
          1 TTTTGCCCCCTGAACT

       2256 CGCAATTTGG


Statistics
Matches: 36,  Mismatches: 6, Indels: 5
        0.77            0.13        0.11

Matches are distributed among these distances:
  27   12  0.33
  28    7  0.19
  30    4  0.11
  31   13  0.36

ACGTcount: A:0.18, C:0.26, G:0.15, T:0.42


Consensus pattern (29 bp):   
TTTTGCCCCCTGAACTTTTAATTTGGACG
Done.