genome.fa.s15023.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015023.1 Corchorus olitorius cultivar O-4 contig15056, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  137382

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
607--788	80	2.3	80	91	0	283	36	2	28	32	1.71
3573--3605	13	2.5	13	90	9	50	0	21	0	78	0.75
8573--8615	21	2.2	20	87	8	61	58	6	16	18	1.60
10404--10556	82	1.9	82	91	2	254	35	9	15	39	1.81
10746--10776	2	15.5	2	100	0	62	51	0	48	0	1.00
14665--14704	2	20.0	2	100	0	80	50	50	0	0	1.00
19352--19480	21	6.1	21	85	0	159	21	27	26	24	1.99
19352--19480	63	2.0	63	86	0	177	21	27	26	24	1.99
20024--20149	42	3.0	42	95	0	225	11	25	19	44	1.83
20418--20473	24	2.3	24	96	0	103	26	44	3	25	1.70
20811--20849	15	2.6	15	87	0	60	5	15	35	43	1.69
24019--24071	17	2.7	19	77	19	56	39	11	13	35	1.80
24002--24064	17	3.5	17	74	16	54	39	9	11	39	1.73
24001--24082	38	2.2	38	81	0	92	39	12	10	37	1.78
30842--30899	30	1.9	30	86	6	82	43	5	6	44	1.53
36472--36581	58	1.9	58	85	7	152	33	13	18	34	1.90
38919--38964	24	2.0	23	95	4	83	54	8	6	30	1.56
38955--39035	39	2.0	40	92	2	137	38	2	7	51	1.43
38971--39031	18	3.2	18	68	9	50	36	1	6	55	1.36
39252--39293	6	6.8	6	97	2	75	50	0	14	35	1.43
41576--41696	60	2.0	60	86	0	170	45	22	12	19	1.84
44152--44219	30	2.3	30	94	0	118	17	19	27	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45617--45642	6	4.3	6	100	0	52	15	15	15	53	1.73
50666--50709	3	15.0	3	95	4	81	31	0	0	68	0.90
58642--58675	16	2.1	16	88	0	50	50	32	8	8	1.64
58651--58685	16	2.2	16	90	10	54	42	34	11	11	1.77
59415--59461	22	2.1	22	84	0	58	59	0	12	27	1.34
61400--61428	7	4.1	7	100	0	58	27	27	13	31	1.94
64696--64752	25	2.3	25	78	6	62	45	10	3	40	1.56
64723--64768	20	2.3	20	100	0	92	41	8	4	45	1.55
64760--64791	2	16.5	2	93	6	57	50	0	0	50	1.00
71732--71798	21	3.2	21	64	16	57	50	14	5	28	1.66
71720--71799	42	1.9	41	97	2	151	47	15	7	30	1.72
71866--71979	56	2.0	56	96	0	210	39	1	25	33	1.66
75186--75247	25	2.6	24	87	5	81	59	4	6	29	1.43
87637--87670	18	2.0	17	88	11	52	26	26	0	47	1.53
92820--94008	336	3.6	331	81	4	1424	36	16	14	32	1.89
96582--96615	3	11.3	3	93	0	59	2	64	0	32	1.08
102548--102594	22	2.1	23	92	4	78	59	8	12	19	1.58
107617--107656	20	2.0	20	85	9	55	20	42	7	30	1.79
107926--107964	20	2.0	20	94	0	69	56	5	0	38	1.22
119062--119118	25	2.4	24	85	5	71	59	3	3	33	1.31
119158--119192	16	2.2	16	89	0	52	37	40	17	5	1.73
119789--120041	132	1.9	130	91	3	411	49	1	10	38	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120731--120896	90	1.9	89	86	5	237	53	3	11	32	1.52
120990--121035	20	2.2	22	88	7	69	52	0	10	36	1.37
127150--127210	27	2.3	27	82	0	68	31	22	11	34	1.90
130964--130990	11	2.5	11	100	0	54	59	7	0	33	1.25
135153--135218	33	2.0	33	87	0	96	39	10	18	31	1.85
135186--135326	41	3.4	41	86	0	210	33	13	17	36	1.88
136568--136673	56	1.9	54	88	3	158	33	9	14	42	1.77
136676--136740	27	2.6	24	79	13	76	47	20	12	20	1.81
136732--136885	79	1.9	79	94	0	272	38	18	7	35	1.78

Tables:   1

The End!