Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015026.1 Corchorus olitorius cultivar O-4 contig15059, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10408
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33


Found at i:10282 original size:123 final size:128

Alignment explanation


    Indices: 10147--10402  Score: 423
    Period size: 123  Copynumber: 2.0  Consensus size: 128

      10137 CATTGTTTAA

                   *                                                         
      10147 ACTTTTATAGTTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATAT-CTT-TA-T
          1 ACTTTTACAGTTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCCTTATACT

                                                                           
      10209 A-ATTTTTACCATTTTACTATTTTAATT-AAAAAACTTATATATATTAGAATTTCTTAAATAT
         66 ATATTTTTACCATTTTACTATTTTAATTAAAAAAACTTATATATATTAGAATTTCTTAAATAT

                                                                             
      10270 ACTTTTACAGTTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCCTTATACC
          1 ACTTTTACAGTTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCCTTATA-C

                                                                      *      
      10335 TATTTTATTTTTACCATTTTACTATTTTAATTAAAAAAACTTATATATATTAGAATTTTTTAAAT
         65 TA---TATTTTTACCATTTTACTATTTTAATTAAAAAAACTTATATATATTAGAATTTCTTAAAT

              
      10400 AT
        127 AT

             
      10402 A
          1 A

      10403 TTTCTT


Statistics
Matches: 122,  Mismatches: 2, Indels: 9
        0.92            0.02        0.07

Matches are distributed among these distances:
 123   55  0.45
 124    3  0.02
 125    2  0.02
 127    2  0.02
 131   26  0.21
 132   34  0.28

ACGTcount: A:0.38, C:0.11, G:0.02, T:0.49


Consensus pattern (128 bp):   
ACTTTTACAGTTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCCTTATACT
ATATTTTTACCATTTTACTATTTTAATTAAAAAAACTTATATATATTAGAATTTCTTAAATAT
Done.