Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015028.1 Corchorus olitorius cultivar O-4 contig15061, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5392
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26


Found at i:42 original size:30 final size:30

Alignment explanation


    Indices: 6--62  Score: 78
    Period size: 30  Copynumber: 1.9  Consensus size: 30

          1 GATAA

                        *    *            
          6 TCCCAAAAGAAGGTTTTTGAAAATAAAGGT
          1 TCCCAAAAGAAGATTTTGGAAAATAAAGGT

                     *            *    
         36 TCCCAAAAGGAGATTTTGGAAATTAAA
          1 TCCCAAAAGAAGATTTTGGAAAATAAA

         63 TGGGTAAGTT


Statistics
Matches: 23,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  30   23  1.00

ACGTcount: A:0.44, C:0.11, G:0.19, T:0.26


Consensus pattern (30 bp):   
TCCCAAAAGAAGATTTTGGAAAATAAAGGT
Done.