Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015030.1 Corchorus olitorius cultivar O-4 contig15063, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13551
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32


Found at i:1702 original size:23 final size:23

Alignment explanation


    Indices: 1630--1702  Score: 60
    Period size: 23  Copynumber: 3.2  Consensus size: 23

       1620 GTACTATATA

                                   
       1630 TACTTTTTGTATCATAACAAAAT
          1 TACTTTTTGTATCATAACAAAAT

                ****  *     *        
       1653 TACTAAAAGTCTCA-ATCTATAAA-
          1 TACTTTTTGTATCATAAC-A-AAAT

                                   
       1676 TACTTTTTGTATCATAACAAAAT
          1 TACTTTTTGTATCATAACAAAAT

                
       1699 TACT
          1 TACT

       1703 CTACGTCATG


Statistics
Matches: 34,  Mismatches: 12, Indels: 8
        0.63            0.22        0.15

Matches are distributed among these distances:
  22    5  0.15
  23   24  0.71
  24    5  0.15

ACGTcount: A:0.41, C:0.15, G:0.04, T:0.40


Consensus pattern (23 bp):   
TACTTTTTGTATCATAACAAAAT

Found at i:3717 original size:14 final size:14

Alignment explanation


    Indices: 3698--3744  Score: 51
    Period size: 14  Copynumber: 3.4  Consensus size: 14

       3688 TTTTATGATT

                          
       3698 ATTTTATTTTTACC
          1 ATTTTATTTTTACC

                   *    **
       3712 ATTTTA-ATTTAAA
          1 ATTTTATTTTTACC

             *            
       3725 AGTTTATTTTTACC
          1 ATTTTATTTTTACC

                  
       3739 ATTTTA
          1 ATTTTA

       3745 CCATTTTCAT


Statistics
Matches: 24,  Mismatches: 8, Indels: 2
        0.71            0.24        0.06

Matches are distributed among these distances:
  13    9  0.38
  14   15  0.62

ACGTcount: A:0.30, C:0.09, G:0.02, T:0.60


Consensus pattern (14 bp):   
ATTTTATTTTTACC
Done.