Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015033.1 Corchorus olitorius cultivar O-4 contig15066, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76473

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
980--1090
58
1.9
58
87
5
161
34
14
18
33
1.91
2911--3295
203
1.9
203
93
2
666
44
8
11
36
1.70
3744--3785
6
6.8
6
97
2
75
50
0
14
35
1.43
14875--15024
75
2.0
75
94
0
264
41
14
16
28
1.86
16713--16751
18
2.4
16
87
12
53
53
10
17
17
1.71
16719--16757
18
2.1
19
95
4
71
51
15
15
17
1.77
22001--22066
32
2.1
32
100
0
132
27
18
3
51
1.60
22420--22466
23
2.0
24
87
4
69
31
14
4
48
1.63
28836--28877
2
21.0
2
95
0
75
50
2
0
47
1.14
33792--33829
18
2.1
19
90
5
60
50
10
28
10
1.70
51496--51911
72
5.8
72
89
0
591
19
26
21
31
1.97
52540--52572
16
2.1
16
94
0
57
33
24
21
21
1.97
53109--53437
43
7.8
42
84
4
423
41
26
10
21
1.85
53109--53437
84
3.9
84
92
1
543
41
26
10
21
1.85
55762--55790
10
2.7
11
89
10
51
75
17
6
0
1.01
61323--61432
56
1.9
57
85
5
152
21
13
7
57
1.61
65947--65986
20
2.0
20
100
0
80
40
15
15
30
1.87
66218--66263
10
4.6
10
83
0
56
36
15
10
36
1.82
66656--66735
40
2.0
40
97
0
151
27
16
15
41
1.88
67265--67316
12
4.2
12
85
4
68
34
19
9
36
1.84
74471--74525
25
2.2
25
87
6
76
30
7
7
54
1.55
74479--74525
25
1.9
25
95
4
87
29
6
8
55
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74597--75199
203
3.0
204
94
3
1053
35
11
8
44
1.71

Tables:   1

The End!