Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015035.1 Corchorus olitorius cultivar O-4 contig15068, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3743
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35


Found at i:2909 original size:48 final size:48

Alignment explanation


    Indices: 2853--2948  Score: 192
    Period size: 48  Copynumber: 2.0  Consensus size: 48

       2843 ATCAGAGTTG

                                                            
       2853 AACTTGTTTGACCAAAAAAGGGACGAGTAGTATTTAATTAATTAACAA
          1 AACTTGTTTGACCAAAAAAGGGACGAGTAGTATTTAATTAATTAACAA

                                                            
       2901 AACTTGTTTGACCAAAAAAGGGACGAGTAGTATTTAATTAATTAACAA
          1 AACTTGTTTGACCAAAAAAGGGACGAGTAGTATTTAATTAATTAACAA

       2949 GTTGATCAGT


Statistics
Matches: 48,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  48   48  1.00

ACGTcount: A:0.44, C:0.10, G:0.17, T:0.29


Consensus pattern (48 bp):   
AACTTGTTTGACCAAAAAAGGGACGAGTAGTATTTAATTAATTAACAA
Done.