Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015036.1 Corchorus olitorius cultivar O-4 contig15069, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70558

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1595--2647
430
2.5
427
81
6
1182
31
14
12
42
1.82
2902--3073
31
5.5
31
81
2
166
32
25
23
18
1.97
8625--9847
22
56.0
22
71
7
479
31
20
11
36
1.88
8753--10258
44
34.3
44
74
6
996
31
20
11
35
1.88
8777--10212
66
21.8
66
74
6
919
31
20
11
35
1.89
9849--10229
22
17.4
22
76
11
230
32
21
11
34
1.89
9752--9943
97
2.0
96
87
5
280
31
22
10
34
1.89
9855--10136
89
3.2
87
79
8
279
32
19
11
35
1.88
10231--10301
36
1.9
37
86
8
101
40
8
9
40
1.69
15576--15618
19
2.3
19
87
0
59
20
13
13
51
1.76
18665--18845
22
8.2
22
75
9
127
42
11
12
33
1.79
18675--18797
44
2.8
44
83
0
165
40
13
11
34
1.81
18675--18844
66
2.6
66
81
9
186
41
11
11
34
1.78
18871--18947
22
3.5
22
80
5
75
37
6
22
33
1.80
19054--19220
22
7.6
22
77
1
120
35
9
15
39
1.80
19077--19227
66
2.3
66
75
1
158
33
10
16
39
1.83
20850--20895
20
2.3
20
81
7
58
28
32
21
17
1.96
21314--21342
9
3.2
9
100
0
58
24
31
20
24
1.98
27089--27197
23
4.6
23
67
17
78
25
24
27
22
2.00
27042--27200
73
2.2
73
96
1
293
27
25
26
21
1.99
29015--29053
18
2.1
19
90
4
62
74
10
5
10
1.21
32449--32491
21
1.9
23
86
13
63
60
6
9
23
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36980--37025
23
2.0
23
100
0
92
52
8
8
30
1.62
39172--39302
53
2.5
53
91
1
201
52
14
14
18
1.74
39296--39474
85
2.1
85
95
0
322
49
22
9
18
1.76
39783--39836
17
3.3
17
80
17
53
25
7
0
66
1.17
39796--39835
14
2.9
14
81
3
55
25
7
0
67
1.16
45883--45911
2
15.0
2
92
7
51
48
0
0
51
1.00
46355--46389
16
2.1
17
89
5
54
11
2
17
68
1.31
47557--47599
17
2.4
19
77
14
56
74
0
0
25
0.82
53339--53363
12
2.1
12
100
0
50
60
0
24
16
1.36
57585--57617
16
2.1
16
88
5
50
63
12
6
18
1.48
58376--58413
18
2.2
18
90
4
60
71
7
13
7
1.31
61586--61616
2
16.0
2
93
6
55
51
0
0
48
1.00
61586--61614
15
1.9
15
100
0
58
51
0
0
48
1.00
61852--61876
2
12.5
2
100
0
50
52
0
0
48
1.00
63760--63850
42
2.2
42
94
2
157
34
5
19
40
1.75
63760--63825
19
3.1
21
63
16
55
33
4
16
45
1.68
65900--65986
43
2.0
43
93
0
147
50
9
10
29
1.67

Tables:   1

The End!