Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015038.1 Corchorus olitorius cultivar O-4 contig15071, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32920

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3412--3455
15
2.9
15
90
10
63
11
6
13
68
1.39
13047--13075
13
2.1
14
93
6
51
41
10
20
27
1.85
16497--16603
28
3.9
27
81
2
106
39
24
16
19
1.92
16497--16571
27
2.7
28
89
2
107
33
26
18
21
1.96
17048--17475
50
8.3
50
90
5
631
26
13
28
30
1.94
17048--17440
209
1.9
213
92
2
677
25
13
29
31
1.94
17451--17499
24
2.0
24
96
0
89
32
8
22
36
1.84
17401--17549
74
2.0
74
96
0
271
30
12
24
32
1.92
17475--17578
50
2.1
50
94
0
181
28
12
25
32
1.92
17351--17578
124
1.8
124
95
0
411
28
12
25
32
1.93
17658--17811
79
1.9
80
94
1
274
37
14
20
28
1.91
18264--18459
50
3.9
50
94
0
320
38
14
15
31
1.88
19484--19508
8
3.1
8
100
0
50
12
12
0
76
1.04
22235--22265
13
2.3
14
94
5
55
6
0
16
77
0.97
25002--25082
33
2.5
33
81
2
83
16
51
24
7
1.69
25062--25101
21
1.9
21
85
10
55
17
57
17
7
1.62

Tables:   1

The End!