Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015041.1 Corchorus olitorius cultivar O-4 contig15074, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10075
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32


Found at i:3405 original size:14 final size:14

Alignment explanation


    Indices: 3386--3414  Score: 58
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       3376 TAGTAATTGT

                          
       3386 ATAGGGGAAGAAGA
          1 ATAGGGGAAGAAGA

                          
       3400 ATAGGGGAAGAAGA
          1 ATAGGGGAAGAAGA

             
       3414 A
          1 A

       3415 GAAGAAGAAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.52, C:0.00, G:0.41, T:0.07


Consensus pattern (14 bp):   
ATAGGGGAAGAAGA

Found at i:3870 original size:14 final size:14

Alignment explanation


    Indices: 3851--3881  Score: 62
    Period size: 14  Copynumber: 2.2  Consensus size: 14

       3841 CACTCGCCAC

                          
       3851 TTCCTTGGCAGCAG
          1 TTCCTTGGCAGCAG

                          
       3865 TTCCTTGGCAGCAG
          1 TTCCTTGGCAGCAG

               
       3879 TTC
          1 TTC

       3882 TTGCATTTAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   17  1.00

ACGTcount: A:0.13, C:0.29, G:0.26, T:0.32


Consensus pattern (14 bp):   
TTCCTTGGCAGCAG
Done.