Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015044.1 Corchorus olitorius cultivar O-4 contig15077, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3326
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.30


Found at i:2433 original size:51 final size:50

Alignment explanation


    Indices: 2332--2433  Score: 111
    Period size: 51  Copynumber: 2.0  Consensus size: 50

       2322 ATTCTTCATA

                                                     * **     
       2332 TTTTCCTTGTTTAGATCTTGTCTCAGGACAAACAAACACTCTTTTAGTGT
          1 TTTTCCTTGTTTAGATCTTGTCTCAGGACAAACAAACACTCGTACAGTGT

                                             *                    
       2382 TTTTCTCTTGTTTCA-ATCTTGTCTCCA-GACATACAAACACT-GTACACGTGT
          1 TTTTC-CTTGTTT-AGATCTTGTCT-CAGGACAAACAAACACTCGTACA-GTGT

             
       2433 T
          1 T

       2434 CTTCATTCAG


Statistics
Matches: 44,  Mismatches: 4, Indels: 7
        0.80            0.07        0.13

Matches are distributed among these distances:
  50    7  0.16
  51   34  0.77
  52    3  0.07

ACGTcount: A:0.24, C:0.23, G:0.13, T:0.41


Consensus pattern (50 bp):   
TTTTCCTTGTTTAGATCTTGTCTCAGGACAAACAAACACTCGTACAGTGT
Done.