Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015052.1 Corchorus olitorius cultivar O-4 contig15085, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2290
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30


Found at i:892 original size:51 final size:50

Alignment explanation


    Indices: 791--892  Score: 116
    Period size: 51  Copynumber: 2.0  Consensus size: 50

        781 GTTCTTCATA

                    *    *                           * **     
        791 TTTTCCTTGTTTCGATCTTGTCTCAGGACAAACAAACACTCTTTTAGTGT
          1 TTTTCCTTATTTCAATCTTGTCTCAGGACAAACAAACACTCGTACAGTGT

                                     *     *                    
        841 TTTTCTCTTATTTCAATCTTGTCTCCGGACATACAAACACT-GTACACGTGT
          1 TTTTC-CTTATTTCAATCTTGTCTCAGGACAAACAAACACTCGTACA-GTGT

             
        892 T
          1 T

        893 CTTCATTCAG


Statistics
Matches: 43,  Mismatches: 7, Indels: 3
        0.81            0.13        0.06

Matches are distributed among these distances:
  50    7  0.16
  51   36  0.84

ACGTcount: A:0.23, C:0.24, G:0.13, T:0.41


Consensus pattern (50 bp):   
TTTTCCTTATTTCAATCTTGTCTCAGGACAAACAAACACTCGTACAGTGT
Done.