Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015053.1 Corchorus olitorius cultivar O-4 contig15086, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5446

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2393--2993
54
11.1
54
82
5
582
32
23
17
25
1.96
2904--3083
90
2.0
90
98
0
351
32
22
18
26
1.97
3008--3258
54
4.6
54
84
4
310
30
21
17
29
1.97
2864--3137
144
1.9
143
84
3
372
31
23
18
27
1.97
3008--3258
108
2.3
108
86
2
344
30
21
17
29
1.97
3224--3493
35
7.7
35
87
2
364
41
18
14
26
1.88
2757--3290
251
2.1
249
81
6
625
32
22
17
27
1.96
3224--3502
105
2.6
105
87
5
409
41
17
14
26
1.88
3237--3524
140
2.0
141
83
3
357
42
17
14
25
1.88
3486--3655
54
3.1
54
88
1
243
38
21
15
24
1.92
4777--4857
39
2.1
39
83
4
101
37
13
13
35
1.84
5035--5080
21
2.2
22
88
7
69
8
19
2
69
1.25

Tables:   1

The End!