Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015060.1 Corchorus olitorius cultivar O-4 contig15093, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21965

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--226
91
2.5
91
92
1
364
30
18
13
37
1.89
308--725
50
8.4
50
94
0
683
30
28
13
27
1.94
1167--1230
27
2.3
29
91
5
105
15
17
29
37
1.91
3741--3787
21
2.2
22
77
11
53
34
0
21
44
1.52
8192--8264
32
2.3
32
85
4
94
23
10
16
49
1.77
8776--8825
3
16.7
3
95
0
91
36
0
0
64
0.94
8770--8821
12
4.3
12
95
0
77
40
0
0
59
0.97
9230--9291
30
2.1
30
87
6
90
45
0
8
46
1.32
9441--9559
35
3.4
35
98
1
229
32
2
18
46
1.63
15617--15653
6
6.5
6
87
9
51
86
10
2
0
0.67
15617--15653
17
2.2
16
90
4
56
86
10
2
0
0.67
15651--15680
8
3.8
8
100
0
60
76
0
13
10
1.01
16746--16803
24
2.4
24
75
16
57
34
5
10
50
1.59

Tables:   1

The End!