Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015061.1 Corchorus olitorius cultivar O-4 contig15094, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33213

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
767--814
24
2.0
24
95
0
87
35
0
14
50
1.44
938--980
2
21.0
2
90
4
68
48
0
4
46
1.22
6407--6528
22
5.5
23
72
10
71
38
9
10
41
1.71
6425--6527
44
2.3
44
77
0
107
38
9
10
40
1.73
8324--8355
16
2.0
16
93
0
55
37
9
6
46
1.61
8584--8617
2
17.0
2
100
0
68
50
0
0
50
1.00
10803--10835
9
3.7
9
95
0
57
15
0
30
54
1.41
18702--18738
2
18.0
2
88
5
56
45
2
0
51
1.15
19622--19681
26
2.4
25
77
11
68
45
3
1
50
1.28
19896--19938
21
1.9
22
81
13
52
62
6
9
20
1.48
26750--26801
23
2.2
23
82
3
59
23
28
25
23
1.99
27324--27380
22
2.6
22
81
8
64
36
5
17
40
1.72
27355--27454
44
2.2
44
87
8
139
36
14
16
34
1.88
27374--27475
47
2.3
43
83
11
116
36
15
14
33
1.88
27369--27477
22
4.8
23
80
10
109
35
14
15
33
1.88
27563--27981
22
19.6
22
66
17
118
38
9
15
36
1.80
27714--28138
44
9.8
44
70
11
220
37
10
16
36
1.83
27946--27992
22
2.1
22
88
0
67
36
10
12
40
1.78
29191--29279
36
2.5
35
82
8
92
56
4
3
35
1.36
31067--31119
14
3.6
14
77
7
52
18
9
22
49
1.76
32851--32898
17
2.8
17
83
0
60
25
20
18
35
1.95

Tables:   1

The End!