Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015064.1 Corchorus olitorius cultivar O-4 contig15097, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6238
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35


Found at i:3890 original size:28 final size:28

Alignment explanation


    Indices: 3837--3890  Score: 72
    Period size: 28  Copynumber: 1.9  Consensus size: 28

       3827 TGAGCCAAGA

                            **  **      
       3837 ATTTTTAATTCTATTTTTTTTGTTACAT
          1 ATTTTTAATTCTATTTAATTAATTACAT

                                      
       3865 ATTTTTAATTCTATTTAATTAATTAC
          1 ATTTTTAATTCTATTTAATTAATTAC

       3891 TTTTGAATCG


Statistics
Matches: 22,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  28   22  1.00

ACGTcount: A:0.28, C:0.07, G:0.02, T:0.63


Consensus pattern (28 bp):   
ATTTTTAATTCTATTTAATTAATTACAT

Found at i:5700 original size:31 final size:31

Alignment explanation


    Indices: 5662--5740  Score: 158
    Period size: 31  Copynumber: 2.5  Consensus size: 31

       5652 TAAATTAATT

                                           
       5662 ATAAGTACCTTATTATTAATTTTTTTAGGTA
          1 ATAAGTACCTTATTATTAATTTTTTTAGGTA

                                           
       5693 ATAAGTACCTTATTATTAATTTTTTTAGGTA
          1 ATAAGTACCTTATTATTAATTTTTTTAGGTA

                             
       5724 ATAAGTACCTTATTATT
          1 ATAAGTACCTTATTATT

       5741 GAATATTAGT


Statistics
Matches: 48,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   48  1.00

ACGTcount: A:0.33, C:0.08, G:0.09, T:0.51


Consensus pattern (31 bp):   
ATAAGTACCTTATTATTAATTTTTTTAGGTA
Done.