Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015065.1 Corchorus olitorius cultivar O-4 contig15098, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10387
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33


Found at i:6536 original size:21 final size:21

Alignment explanation


    Indices: 6505--6559  Score: 65
    Period size: 21  Copynumber: 2.6  Consensus size: 21

       6495 CTAATAACAA

                 *               
       6505 TTGGATGAAAATTAACCCTTT
          1 TTGGACGAAAATTAACCCTTT

              *            **    
       6526 TTTGACGAAAATTAATTCTTT
          1 TTGGACGAAAATTAACCCTTT

                 *       
       6547 TTGGATGAAAATT
          1 TTGGACGAAAATT

       6560 GATATGATTC


Statistics
Matches: 28,  Mismatches: 6, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  21   28  1.00

ACGTcount: A:0.35, C:0.09, G:0.15, T:0.42


Consensus pattern (21 bp):   
TTGGACGAAAATTAACCCTTT

Found at i:8341 original size:27 final size:27

Alignment explanation


    Indices: 8303--8356  Score: 108
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       8293 ATTTAATTAA

                                       
       8303 GAGCTTACATCATGTCCTAACACTGAC
          1 GAGCTTACATCATGTCCTAACACTGAC

                                       
       8330 GAGCTTACATCATGTCCTAACACTGAC
          1 GAGCTTACATCATGTCCTAACACTGAC

       8357 AAGAGGCTCT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   27  1.00

ACGTcount: A:0.30, C:0.30, G:0.15, T:0.26


Consensus pattern (27 bp):   
GAGCTTACATCATGTCCTAACACTGAC
Done.