Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015067.1 Corchorus olitorius cultivar O-4 contig15100, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7566

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
650--696
25
1.9
24
95
4
85
55
8
6
29
1.55
687--767
39
2.0
40
90
2
128
38
3
6
51
1.45
1011--1058
2
24.5
2
78
4
53
50
0
8
41
1.33
1597--1632
12
3.2
12
88
11
58
61
0
0
38
0.96
2041--2085
23
1.9
24
86
4
65
40
20
4
35
1.72
4987--5017
7
4.3
7
95
4
53
0
12
0
87
0.55
4986--5014
8
3.8
8
90
9
51
0
10
0
89
0.48
5100--5175
22
3.5
22
70
20
68
40
11
7
39
1.71
5405--5547
44
3.2
44
100
0
286
34
18
14
32
1.92
5556--5699
43
3.4
40
75
12
128
37
15
9
37
1.80
5425--5829
22
18.7
22
66
10
145
35
18
10
36
1.85
5661--5823
88
1.9
88
82
7
206
35
17
9
37
1.83
5903--5969
22
3.0
22
82
0
80
49
19
2
28
1.63
7536--7564
2
14.5
2
100
0
58
48
0
0
51
1.00

Tables:   1

The End!