Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015071.1 Corchorus olitorius cultivar O-4 contig15104, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1861
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31


Found at i:1218 original size:9 final size:8

Alignment explanation


    Indices: 1196--1220  Score: 50
    Period size: 8  Copynumber: 3.1  Consensus size: 8

       1186 AATCAATTGA

                    
       1196 ATAAAAAG
          1 ATAAAAAG

                    
       1204 ATAAAAAG
          1 ATAAAAAG

                    
       1212 ATAAAAAG
          1 ATAAAAAG

             
       1220 A
          1 A

       1221 GTTAGATTAG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   17  1.00

ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12


Consensus pattern (8 bp):   
ATAAAAAG
Done.