Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01015074.1 Corchorus olitorius cultivar O-4 contig15107, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39473
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
Found at i:1001 original size:16 final size:16
Alignment explanation
Indices: 965--1055 Score: 80
Period size: 16 Copynumber: 5.8 Consensus size: 16
955 TTCGGGCGGG
* *
965 TTCGGGTTTGGGTA-C
1 TTCGGGTTCGGGTATT
980 TTCGGGTTCGGGTATT
1 TTCGGGTTCGGGTATT
* *
996 TTCGGGCTCGGGT-TAA
1 TTCGGGTTCGGGTAT-T
*
1012 GTCGGGTTCGGGTATT
1 TTCGGGTTCGGGTATT
*
1028 TTCGGGCTCGGGT-TAT
1 TTCGGGTTCGGGTAT-T
*
1044 GTCGGGTTCGGG
1 TTCGGGTTCGGG
1056 CTCTGGTAGG
Statistics
Matches: 61, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
15 15 0.25
16 45 0.74
17 1 0.02
ACGTcount: A:0.07, C:0.15, G:0.42, T:0.36
Consensus pattern (16 bp):
TTCGGGTTCGGGTATT
Found at i:1022 original size:32 final size:32
Alignment explanation
Indices: 981--1055 Score: 141
Period size: 32 Copynumber: 2.3 Consensus size: 32
971 TTTGGGTACT
981 TCGGGTTCGGGTATTTTCGGGCTCGGGTTAAG
1 TCGGGTTCGGGTATTTTCGGGCTCGGGTTAAG
*
1013 TCGGGTTCGGGTATTTTCGGGCTCGGGTTATG
1 TCGGGTTCGGGTATTTTCGGGCTCGGGTTAAG
1045 TCGGGTTCGGG
1 TCGGGTTCGGG
1056 CTCTGGTAGG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.07, C:0.16, G:0.43, T:0.35
Consensus pattern (32 bp):
TCGGGTTCGGGTATTTTCGGGCTCGGGTTAAG
Found at i:1053 original size:22 final size:22
Alignment explanation
Indices: 1028--1107 Score: 76
Period size: 22 Copynumber: 3.6 Consensus size: 22
1018 TTCGGGTATT
*
1028 TTCGGGCTCGGGTTATGTCGGG
1 TTCGGGCTCGGGTTAGGTCGGG
*
1050 TTCGGGCTCTGG-TAGGGTTCCGGG
1 TTCGGGCTCGGGTTA-GG-T-CGGG
**
1074 -TCGGG-TCGGGTCGGGTCGGG
1 TTCGGGCTCGGGTTAGGTCGGG
1094 TTCGGGCTCGGGTT
1 TTCGGGCTCGGGTT
1108 TGATTTTGAT
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
20 4 0.09
21 8 0.17
22 24 0.52
23 6 0.13
24 4 0.09
ACGTcount: A:0.03, C:0.20, G:0.49, T:0.29
Consensus pattern (22 bp):
TTCGGGCTCGGGTTAGGTCGGG
Found at i:1104 original size:6 final size:5
Alignment explanation
Indices: 1070--1106 Score: 56
Period size: 5 Copynumber: 7.0 Consensus size: 5
1060 GGTAGGGTTC
1070 CGGGT CGGGT CGGGT CGGGT CGGGTT CGGGCT CGGGT
1 CGGGT CGGGT CGGGT CGGGT CGGG-T CGGG-T CGGGT
1107 TTGATTTTGA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
5 20 0.67
6 10 0.33
ACGTcount: A:0.00, C:0.22, G:0.57, T:0.22
Consensus pattern (5 bp):
CGGGT
Found at i:1255 original size:13 final size:12
Alignment explanation
Indices: 1232--1278 Score: 51
Period size: 13 Copynumber: 3.8 Consensus size: 12
1222 AAGTTTATTG
1232 ATAATATATAAT
1 ATAATATATAAT
1244 ATAATAATATAAT
1 ATAAT-ATATAAT
* *
1257 ATAACAT-TATT
1 ATAATATATAAT
1268 ATCAATATATA
1 AT-AATATATA
1279 TAAAGATTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
11 5 0.17
12 11 0.38
13 13 0.45
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.40
Consensus pattern (12 bp):
ATAATATATAAT
Found at i:1549 original size:21 final size:21
Alignment explanation
Indices: 1523--1566 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
1513 ATCAATTAAA
1523 TATAAAATACATATACTTTAT
1 TATAAAATACATATACTTTAT
1544 TATAAAATACATATACTTTAT
1 TATAAAATACATATACTTTAT
1565 TA
1 TA
1567 ATAATTAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (21 bp):
TATAAAATACATATACTTTAT
Found at i:1623 original size:31 final size:31
Alignment explanation
Indices: 1588--1659 Score: 78
Period size: 31 Copynumber: 2.3 Consensus size: 31
1578 TAAATTATTG
*
1588 CAAATTAAAACAAAT-TAAG-CATTAAATTAAA
1 CAAATTAAAA-AAATGAAAGTC-TTAAATTAAA
*
1619 CAAA-TAATTAAAATGAAAGTCTTAAATTAAA
1 CAAATTAA-AAAAATGAAAGTCTTAAATTAAA
1650 CAAATTAAAA
1 CAAATTAAAA
1660 GCTGATAGAC
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
30 7 0.21
31 23 0.68
32 4 0.12
ACGTcount: A:0.61, C:0.08, G:0.04, T:0.26
Consensus pattern (31 bp):
CAAATTAAAAAAATGAAAGTCTTAAATTAAA
Found at i:1906 original size:2 final size:2
Alignment explanation
Indices: 1901--1929 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
1891 TATATAAGTT
1901 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1930 TTAGTAGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2038 original size:26 final size:22
Alignment explanation
Indices: 1981--2038 Score: 53
Period size: 26 Copynumber: 2.4 Consensus size: 22
1971 AATTGTGATC
*
1981 ATTATTATATAAATTTTATTAT
1 ATTAATATATAAATTTTATTAT
2003 ATTCATATATATAATAGTTTTATTTAAT
1 ATT-A-ATATATAA-A-TTTTA-TT-AT
2031 ATTAATAT
1 ATTAATAT
2039 GTTTTTTTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
22 3 0.10
23 1 0.03
24 7 0.24
25 1 0.03
26 9 0.31
27 3 0.10
28 5 0.17
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (22 bp):
ATTAATATATAAATTTTATTAT
Found at i:2150 original size:22 final size:21
Alignment explanation
Indices: 2105--2152 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
2095 TATTTCGGGC
*
2105 TCGGGTCGGGTTCGGGTAATT
1 TCGGGTCGGGTTCGGGTAAGT
**
2126 TCGGGTTCGGGTTCGGGTGGGT
1 TCGGG-TCGGGTTCGGGTAAGT
2148 TCGGG
1 TCGGG
2153 ACGTTGACTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 5 0.22
22 18 0.78
ACGTcount: A:0.04, C:0.15, G:0.50, T:0.31
Consensus pattern (21 bp):
TCGGGTCGGGTTCGGGTAAGT
Found at i:8104 original size:20 final size:20
Alignment explanation
Indices: 8079--8116 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
8069 ATATCATGAG
*
8079 TTGAATTATCACCAACTTTT
1 TTGAATCATCACCAACTTTT
8099 TTGAATCATCACCAACTT
1 TTGAATCATCACCAACTT
8117 AATAAGTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (20 bp):
TTGAATCATCACCAACTTTT
Found at i:9380 original size:10 final size:10
Alignment explanation
Indices: 9365--9391 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
9355 TAAATTAGTT
9365 TATGTATGTA
1 TATGTATGTA
9375 TATGTATGTA
1 TATGTATGTA
9385 TATGTAT
1 TATGTAT
9392 AACTCTGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.19, T:0.52
Consensus pattern (10 bp):
TATGTATGTA
Found at i:9830 original size:2 final size:2
Alignment explanation
Indices: 9823--9849 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
9813 GTATTGAAGA
9823 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
9850 AGCTGTTGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14301 original size:17 final size:17
Alignment explanation
Indices: 14279--14313 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
14269 AAGAAGATGC
14279 CAATTCAACGTGAATGA
1 CAATTCAACGTGAATGA
14296 CAATTCAACGTGAATGA
1 CAATTCAACGTGAATGA
14313 C
1 C
14314 TTTATTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (17 bp):
CAATTCAACGTGAATGA
Found at i:15066 original size:6 final size:6
Alignment explanation
Indices: 15055--15081 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
15045 CTATTTCAAG
15055 AAAGAA AAAGAA AAAGAA AAAGAA AAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAA
15082 TCTCTTTAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:18122 original size:29 final size:29
Alignment explanation
Indices: 18076--18148 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
18066 TCATATCATT
18076 TTGCAAAATGATT-ATTTTTT-TTAGAA-C
1 TTGCAAAATGATTAATTTTTTGTT-GAAGC
*
18103 TTGCAAAATGATTAATTTTTTGTTGAAGG
1 TTGCAAAATGATTAATTTTTTGTTGAAGC
*
18132 ATGCAAAATGATTAATT
1 TTGCAAAATGATTAATT
18149 AATTGCAATG
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
27 13 0.32
28 10 0.24
29 18 0.44
ACGTcount: A:0.36, C:0.05, G:0.15, T:0.44
Consensus pattern (29 bp):
TTGCAAAATGATTAATTTTTTGTTGAAGC
Found at i:23279 original size:34 final size:32
Alignment explanation
Indices: 23202--23329 Score: 130
Period size: 32 Copynumber: 3.9 Consensus size: 32
23192 TTTTGAAAGG
* **
23202 TAAAATCATGACAACTTCTGGTGTCAATTGAA
1 TAAAATCATGACATCTTCAAGTGTCAATTGAA
* *
23234 TAAAATTATGACATCTTCAAGTGTCTATTGGAAA
1 TAAAATCATGACATCTTCAAGTGTCAATT-G-AA
** * **
23268 TTTAATCATGACAACTTCTGGTGTCAATTGAA
1 TAAAATCATGACATCTTCAAGTGTCAATTGAA
* *
23300 TAAAATTATGACATCTTCAAGTATCAATTG
1 TAAAATCATGACATCTTCAAGTGTCAATTG
23330 CAAGATCATG
Statistics
Matches: 75, Mismatches: 19, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
32 49 0.65
33 2 0.03
34 24 0.32
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (32 bp):
TAAAATCATGACATCTTCAAGTGTCAATTGAA
Found at i:23282 original size:66 final size:62
Alignment explanation
Indices: 23203--23417 Score: 245
Period size: 66 Copynumber: 3.4 Consensus size: 62
23193 TTTGAAAGGT
* *
23203 AAAATCATGACAACTTCTGGTGTCAATTGAATAAAATTATGACATCTTCAAGTGTCTATTGGA
1 AAAATCATGACAACTTCTGGTGTCAATTGAATAAAATTATGACATCTTCAAGTATCAATT-GA
*
23266 AATTTAATCATGACAACTTCTGGTGTCAATTGAATAAAATTATGACATCTTCAAGTATCAATTGC
1 AA---AATCATGACAACTTCTGGTGTCAATTGAATAAAATTATGACATCTTCAAGTATCAATTGA
* * * * * * *** * *
23331 AAGATCATGACAACTTTTGGTGTCAATTG--CAACATCATGACAACTTTTGGTGTCAATTGC
1 AAAATCATGACAACTTCTGGTGTCAATTGAATAAAATTATGACATCTTCAAGTATCAATTGA
*
23391 AAAATCATGACAGCTTCTGGTGTCAAT
1 AAAATCATGACAACTTCTGGTGTCAAT
23418 AGCAAGACCA
Statistics
Matches: 133, Mismatches: 16, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
60 47 0.35
62 25 0.19
63 2 0.02
65 3 0.02
66 56 0.42
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.33
Consensus pattern (62 bp):
AAAATCATGACAACTTCTGGTGTCAATTGAATAAAATTATGACATCTTCAAGTATCAATTGA
Found at i:23357 original size:30 final size:30
Alignment explanation
Indices: 23274--23655 Score: 487
Period size: 30 Copynumber: 12.7 Consensus size: 30
23264 GAAATTTAAT
* * *
23274 CATGACAACTTCTGGTGTCAATTGAATAAAAT
1 CATGACAACTTCTGGTGTCAATTG--CAAGAC
* * ** * *
23306 TATGACATCTTCAAGTATCAATTGCAAGAT
1 CATGACAACTTCTGGTGTCAATTGCAAGAC
* * *
23336 CATGACAACTTTTGGTGTCAATTGCAACAT
1 CATGACAACTTCTGGTGTCAATTGCAAGAC
* * *
23366 CATGACAACTTTTGGTGTCAATTGCAAAAT
1 CATGACAACTTCTGGTGTCAATTGCAAGAC
* *
23396 CATGACAGCTTCTGGTGTCAATAGCAAGAC
1 CATGACAACTTCTGGTGTCAATTGCAAGAC
*
23426 CATGACAACTTCTGGTGTCAATTGCAAGGC
1 CATGACAACTTCTGGTGTCAATTGCAAGAC
*
23456 CATGACAACTTCTGGTGTCATTTGCAAGAC
1 CATGACAACTTCTGGTGTCAATTGCAAGAC
*
23486 CATGACAACTTCTGGTGTCATTTGCAAGAC
1 CATGACAACTTCTGGTGTCAATTGCAAGAC
23516 CATGACAACTTCTGGTGTCAATTGCAAGAC
1 CATGACAACTTCTGGTGTCAATTGCAAGAC
*
23546 CATGACAACTTATGGTGTCAATTGCAAGAC
1 CATGACAACTTCTGGTGTCAATTGCAAGAC
* * *
23576 CATGGCAACTTCTGGTGTC-ATCTGTAAGAT
1 CATGACAACTTCTGGTGTCAAT-TGCAAGAC
* * *
23606 CATGACAACTTCTGGTGTCGATTGTAAAAC
1 CATGACAACTTCTGGTGTCAATTGCAAGAC
23636 CATGACAACTTCTGGTGTCA
1 CATGACAACTTCTGGTGTCA
23656 TTTAGAGAGT
Statistics
Matches: 313, Mismatches: 35, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
29 2 0.01
30 290 0.93
31 2 0.01
32 19 0.06
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (30 bp):
CATGACAACTTCTGGTGTCAATTGCAAGAC
Found at i:25027 original size:18 final size:18
Alignment explanation
Indices: 24992--25029 Score: 53
Period size: 16 Copynumber: 2.2 Consensus size: 18
24982 ATTAATTAAT
24992 TATATAAATATAATTATA
1 TATATAAATATAATTATA
*
25010 TATATAAA-AT-ATGATA
1 TATATAAATATAATTATA
25026 TATA
1 TATA
25030 CTACCTATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 9 0.47
17 2 0.11
18 8 0.42
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (18 bp):
TATATAAATATAATTATA
Found at i:26796 original size:16 final size:17
Alignment explanation
Indices: 26768--26799 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
26758 TTTAGGCTAA
26768 AAAGGATAAAAGAAATG
1 AAAGGATAAAAGAAATG
26785 AAAGGA-AAAAGAAAT
1 AAAGGATAAAAGAAAT
26800 AAAATTAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.69, C:0.00, G:0.22, T:0.09
Consensus pattern (17 bp):
AAAGGATAAAAGAAATG
Found at i:29583 original size:31 final size:31
Alignment explanation
Indices: 29545--29607 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
29535 TCTAACATAA
29545 TTAAATTGCTGGAAAAAAACATAATTTCTTT
1 TTAAATTGCTGGAAAAAAACATAATTTCTTT
*
29576 TTAAATTGTTGGAAAAAAACATAATTTCTTT
1 TTAAATTGCTGGAAAAAAACATAATTTCTTT
29607 T
1 T
29608 GAAAGAATAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (31 bp):
TTAAATTGCTGGAAAAAAACATAATTTCTTT
Found at i:35894 original size:3 final size:3
Alignment explanation
Indices: 35886--35991 Score: 212
Period size: 3 Copynumber: 35.3 Consensus size: 3
35876 ATATTCCATC
35886 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
35934 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
35982 ATT ATT ATT A
1 ATT ATT ATT A
35992 CCTCATTCTG
Statistics
Matches: 103, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 103 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:37143 original size:15 final size:15
Alignment explanation
Indices: 37123--37153 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
37113 GTTAAACAAA
*
37123 GCCCAATGAGGAAAT
1 GCCCAAGGAGGAAAT
37138 GCCCAAGGAGGAAAT
1 GCCCAAGGAGGAAAT
37153 G
1 G
37154 GGAAAATTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.19, G:0.32, T:0.10
Consensus pattern (15 bp):
GCCCAAGGAGGAAAT
Found at i:37904 original size:38 final size:38
Alignment explanation
Indices: 37862--37935 Score: 139
Period size: 38 Copynumber: 1.9 Consensus size: 38
37852 GTTACAAAAT
37862 CATTAATATTAATTTGAAGGTTATATACATAATATTAC
1 CATTAATATTAATTTGAAGGTTATATACATAATATTAC
*
37900 CATTAATATTAATTTGGAGGTTATATACATAATATT
1 CATTAATATTAATTTGAAGGTTATATACATAATATT
37936 TGGGAGGTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.41, C:0.07, G:0.09, T:0.43
Consensus pattern (38 bp):
CATTAATATTAATTTGAAGGTTATATACATAATATTAC
Found at i:38641 original size:19 final size:18
Alignment explanation
Indices: 38617--38652 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
38607 TGAAGATTTA
38617 TTGAAGACAATTTGAAGAT
1 TTGAAGACAA-TTGAAGAT
*
38636 TTGAAGACCATTGAAGA
1 TTGAAGACAATTGAAGA
38653 ATAATTTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.28
Consensus pattern (18 bp):
TTGAAGACAATTGAAGAT
Done.