genome.fa.s15076.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015076.1 Corchorus olitorius cultivar O-4 contig15109, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97251

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1840--1905	14	4.6	14	76	14	64	45	12	9	33	1.73
1834--1888	28	2.0	28	88	0	83	45	12	7	34	1.70
2542--2603	8	7.2	8	73	12	52	77	1	19	1	0.94
2546--2603	18	3.2	18	78	7	64	77	1	18	1	0.94
2554--2609	27	2.1	27	83	9	71	75	3	17	3	1.10
2735--2904	87	2.0	87	86	0	241	36	11	24	27	1.90
3684--4363	37	18.4	37	79	4	656	23	15	15	44	1.85
3684--4296	148	4.1	149	87	2	781	23	15	15	44	1.86
4099--4399	149	2.0	149	81	3	356	24	15	12	47	1.80
4470--4641	54	3.2	54	84	5	197	29	13	21	36	1.91
4714--4791	33	2.4	33	91	0	120	43	17	6	32	1.75
4946--5010	7	9.3	7	82	0	67	55	18	3	23	1.56
5975--6014	8	5.1	8	85	14	57	52	22	0	25	1.47
5987--6021	14	2.5	14	100	0	70	57	20	0	22	1.41
7866--7905	21	1.9	21	89	0	62	20	30	20	30	1.97
10425--13425	332	9.2	327	76	10	2396	32	14	15	37	1.87
14343--14503	74	2.2	74	100	0	322	42	7	9	39	1.66
18428--18474	18	2.6	18	75	21	53	57	4	0	38	1.18
18476--18500	11	2.3	11	100	0	50	48	0	0	52	1.00
21555--21618	31	2.1	31	100	0	128	48	17	3	31	1.62
31648--31766	57	2.1	57	88	3	177	40	21	1	36	1.63
31818--31898	42	1.9	42	97	0	153	29	7	16	46	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36295--36361	2	37.5	2	71	21	51	43	1	1	53	1.19
36293--36377	12	7.1	12	72	15	68	44	1	1	52	1.16
41765--41816	28	1.9	26	88	7	77	32	3	7	55	1.46
42096--42131	16	2.2	17	90	5	56	36	0	8	55	1.30
43167--43224	26	2.2	26	87	6	80	31	5	6	56	1.47
48404--48455	24	2.2	24	82	6	61	78	5	15	0	0.92
50372--50946	54	10.6	54	90	1	832	26	16	21	36	1.94
50976--51687	106	6.7	106	82	7	734	28	18	22	30	1.98
50966--51687	160	4.5	161	80	9	764	28	18	22	30	1.97
50389--51687	54	24.2	54	81	9	813	27	17	22	32	1.96
52415--52474	28	2.2	27	78	18	70	30	5	6	58	1.45
52415--52474	29	2.1	29	87	6	86	30	5	6	58	1.45
52746--52781	16	2.2	17	90	5	56	36	0	8	55	1.30
53182--53250	23	3.1	23	82	10	72	23	14	0	62	1.32
53180--53256	11	6.8	12	71	16	58	23	14	0	62	1.32
56477--56534	29	2.0	30	82	3	73	25	17	20	36	1.94
56596--56626	2	15.5	2	100	0	62	51	0	0	48	1.00
57889--58049	74	2.2	74	100	0	322	42	7	9	39	1.66
59904--60158	131	2.0	126	88	6	381	38	10	1	49	1.48
60144--60182	14	2.9	14	88	3	53	38	5	2	53	1.37
61867--61907	16	2.6	16	84	0	55	46	31	14	7	1.72
62109--62175	32	2.1	32	82	0	80	38	29	10	20	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62784--62828	19	2.4	18	85	10	56	42	2	2	53	1.25
70724--70804	39	2.1	39	100	0	162	37	9	19	33	1.85
72040--72175	60	2.3	60	82	5	150	40	13	16	29	1.87
72223--72359	60	2.3	60	83	2	186	29	16	15	38	1.90
78927--78957	1	31.0	1	100	0	62	100	0	0	0	0.00
79471--79853	195	2.0	191	95	2	685	39	11	12	37	1.78
80293--80356	31	1.9	33	84	15	87	50	14	9	26	1.73
80413--80452	19	2.0	20	95	4	73	35	5	15	45	1.68
82851--82884	17	2.1	17	88	5	52	44	0	2	52	1.16
87675--87751	6	12.7	6	82	8	93	35	11	0	53	1.38
87685--87760	12	5.8	13	81	13	86	35	11	0	52	1.38
87681--87761	6	13.3	6	88	1	63	37	11	0	51	1.37
89123--89192	36	1.9	36	97	0	131	61	7	8	22	1.49
91579--91616	3	12.7	3	94	0	67	0	34	0	65	0.93
91805--91848	22	2.0	21	82	4	52	43	11	9	36	1.72

Tables:   1

The End!