Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015078.1 Corchorus olitorius cultivar O-4 contig15111, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14909

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
509--550
2
21.5
2
80
4
50
50
0
7
42
1.30
2063--2222
81
2.0
79
97
2
302
30
12
8
48
1.71
2323--2383
22
2.8
22
85
5
79
36
8
11
44
1.71
2418--2472
23
2.4
23
90
0
92
41
14
5
38
1.69
4201--4336
21
6.3
21
70
17
75
39
16
7
36
1.76
4181--4346
22
7.7
22
72
13
114
38
14
8
38
1.76
7232--7292
25
2.3
27
83
11
72
45
1
4
47
1.34
9536--9590
20
2.8
20
91
0
92
50
9
10
29
1.68
9891--9936
7
7.0
7
87
7
62
0
10
0
89
0.50
9893--9936
1
44.0
1
81
0
52
0
9
0
90
0.44
9893--9935
19
2.3
19
96
4
79
0
9
0
90
0.45
11225--11279
2
28.5
2
89
7
87
49
0
1
49
1.11
11785--11844
28
2.1
28
96
0
111
16
36
31
15
1.90

Tables:   1

The End!