Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015080.1 Corchorus olitorius cultivar O-4 contig15113, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9019
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34


Found at i:2490 original size:31 final size:32

Alignment explanation


    Indices: 2430--2490  Score: 88
    Period size: 32  Copynumber: 1.9  Consensus size: 32

       2420 CTAAGCAATT

                                  ***       
       2430 AAGTTAAAAGGATTTTTTTGTACTTCAAAAAA
          1 AAGTTAAAAGGATTTTTTTGTAAAGCAAAAAA

                                          
       2462 AAGTTAAAAGGATTTTTTT-TAAAGCAAAA
          1 AAGTTAAAAGGATTTTTTTGTAAAGCAAAA

       2491 TGATTCATAA


Statistics
Matches: 26,  Mismatches: 3, Indels: 1
        0.87            0.10        0.03

Matches are distributed among these distances:
  31    7  0.27
  32   19  0.73

ACGTcount: A:0.46, C:0.05, G:0.13, T:0.36


Consensus pattern (32 bp):   
AAGTTAAAAGGATTTTTTTGTAAAGCAAAAAA

Found at i:4205 original size:11 final size:11

Alignment explanation


    Indices: 4189--4213  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

       4179 ATATATCTAC

                       
       4189 AATCCTATAGT
          1 AATCCTATAGT

                       
       4200 AATCCTATAGT
          1 AATCCTATAGT

               
       4211 AAT
          1 AAT

       4214 ACCACCGTGG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36


Consensus pattern (11 bp):   
AATCCTATAGT
Done.