Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015082.1 Corchorus olitorius cultivar O-4 contig15115, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34359

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
685--742
19
2.9
19
82
5
71
37
12
20
29
1.89
1491--1550
27
2.3
25
83
10
84
48
8
5
38
1.55
1497--1549
27
2.0
27
96
0
97
47
9
3
39
1.54
3132--4452
333
4.0
332
76
10
1248
36
14
14
34
1.87
4821--4881
15
4.1
15
79
10
54
54
0
3
42
1.17
4821--4867
15
3.1
15
84
3
58
55
0
0
44
0.99
6553--6582
2
15.5
2
93
6
53
53
0
0
46
1.00
10489--10530
21
2.0
21
86
9
59
16
0
35
47
1.47
15014--15051
20
1.9
20
100
0
76
34
0
21
44
1.52
14776--15308
274
1.9
276
81
6
634
36
12
13
37
1.83
15066--16553
328
4.5
320
76
9
1036
37
15
13
34
1.87
16513--16590
39
2.0
40
92
5
133
25
10
7
56
1.59
16556--17598
327
3.2
323
78
7
978
36
15
13
34
1.86
17670--18584
335
2.8
326
77
7
850
36
13
13
36
1.84
18948--18980
15
2.2
15
89
10
50
51
0
0
48
1.00
18925--19023
18
5.6
18
69
19
57
51
1
3
44
1.23
24728--24757
4
7.5
4
92
0
51
23
0
0
76
0.78
25491--25548
29
2.0
29
93
0
98
43
8
18
29
1.80
29281--30253
439
2.2
438
86
2
1310
42
17
13
26
1.86
31960--32018
28
2.1
28
84
12
77
27
42
28
1
1.65
33281--33509
30
7.6
30
94
0
368
30
19
20
29
1.97
33490--33667
34
5.6
31
81
16
201
35
16
15
32
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33460--33699
62
3.8
62
91
5
347
34
15
17
31
1.92

Tables:   1

The End!