Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015083.1 Corchorus olitorius cultivar O-4 contig15116, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58022

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69--111
15
2.8
15
82
3
50
76
0
23
0
0.78
76--122
19
2.6
18
82
3
58
74
0
25
0
0.82
3107--3158
23
2.3
23
86
6
70
38
1
19
40
1.63
3078--3383
22
13.7
23
69
13
144
34
10
17
37
1.84
3254--3342
45
2.0
45
84
4
117
32
11
17
38
1.86
3437--3484
22
2.2
22
85
7
62
47
10
14
27
1.76
8311--8341
12
2.6
12
100
0
62
90
9
0
0
0.46
26489--26567
38
2.1
38
97
2
151
60
13
5
20
1.52
27176--27205
13
2.3
13
94
0
51
90
0
6
3
0.56
27801--28184
22
17.3
22
68
15
138
37
10
16
35
1.82
27594--28184
44
13.4
44
68
11
170
37
9
16
36
1.82
27675--28030
66
5.4
65
71
8
263
36
9
17
36
1.82
28309--28434
44
2.9
44
80
0
153
34
12
16
36
1.87
28394--28452
22
2.7
22
81
5
66
33
10
16
38
1.83
28316--28455
44
3.2
44
76
2
138
33
10
17
38
1.84
28498--28566
22
3.1
22
75
4
68
37
5
18
37
1.75
27879--28561
44
15.4
44
65
14
120
36
10
16
36
1.83
28716--28769
22
2.5
22
81
6
65
35
5
14
44
1.69
28875--28914
2
19.5
2
89
5
62
47
5
0
47
1.24
30070--30286
22
9.8
22
69
11
115
34
10
17
37
1.84
30316--30686
22
16.7
21
68
15
137
39
9
16
33
1.82
31050--31151
23
4.5
23
86
2
118
38
7
16
37
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30796--31448
22
30.0
22
69
13
282
38
9
16
35
1.80
31409--31456
22
2.2
22
85
7
62
47
8
16
27
1.75
49083--49108
13
2.0
13
100
0
52
15
0
30
53
1.42
51799--51833
15
2.3
15
90
0
52
28
11
0
60
1.32
57073--57101
2
14.5
2
100
0
58
48
0
0
51
1.00

Tables:   1

The End!