Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015087.1 Corchorus olitorius cultivar O-4 contig15120, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120681

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1675--1707
16
2.1
16
94
0
57
72
0
0
27
0.85
2268--2292
12
2.1
12
100
0
50
8
24
24
44
1.80
2348--2413
32
2.1
32
88
0
96
24
9
21
45
1.80
2658--2785
66
1.9
66
93
0
220
29
18
14
36
1.91
2707--2943
117
2.0
118
92
2
397
30
17
16
35
1.92
2845--2870
13
2.0
13
100
0
52
38
23
15
23
1.92
7134--7366
22
10.5
22
71
11
118
36
9
16
36
1.82
7131--7305
66
2.6
66
83
7
201
34
10
18
36
1.86
7413--7474
22
2.8
22
73
9
63
38
9
17
33
1.83
7513--7959
22
20.5
22
69
15
193
37
10
16
36
1.82
15971--16220
121
2.0
127
89
7
386
49
1
10
38
1.47
19646--19677
3
10.7
3
100
0
64
0
31
0
68
0.90
24657--24699
3
14.3
3
100
0
86
67
0
0
32
0.91
32494--32737
132
1.9
132
89
0
382
50
2
11
36
1.50
37229--37288
29
2.1
29
96
0
111
46
10
23
20
1.80
37511--37592
42
2.0
42
97
0
155
21
15
6
56
1.62
37642--37725
39
2.2
39
91
0
132
38
16
8
36
1.79
59926--59958
17
2.0
17
88
5
50
18
30
12
39
1.87
69016--69048
17
2.0
17
88
5
50
18
30
12
39
1.87
71034--71068
16
2.2
16
89
0
52
51
17
22
8
1.72
71164--71446
41
6.9
41
86
3
372
37
19
13
29
1.90
71840--71896
29
2.0
29
86
6
80
43
15
15
24
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72783--72817
2
17.5
2
100
0
70
48
0
0
51
1.00
73343--73394
27
1.9
27
92
0
86
30
3
23
42
1.72
73507--73534
13
2.2
13
100
0
56
42
35
0
21
1.53
73566--73667
48
2.1
48
94
0
177
44
30
13
11
1.80
87226--87255
16
1.9
15
93
6
51
23
0
33
43
1.54
88687--88892
104
2.0
104
87
0
295
13
28
10
48
1.75
89730--89965
117
2.0
118
95
3
431
26
19
13
41
1.87
92388--92468
29
2.7
29
79
9
83
45
9
14
29
1.77
98040--98064
3
8.3
3
100
0
50
0
32
0
68
0.90
104704--104785
41
2.0
41
100
0
164
41
17
2
39
1.62
104705--104771
22
3.2
22
64
20
61
41
20
2
34
1.68
108960--108994
11
3.2
11
87
0
52
80
14
2
2
0.95
115486--115545
31
2.0
31
86
3
86
38
10
21
30
1.86
118231--118274
2
22.5
2
95
4
81
50
0
0
50
1.00
119820--119851
12
2.7
12
90
0
55
53
28
15
3
1.57
120227--120305
39
2.0
40
90
2
124
50
7
3
37
1.49

Tables:   1

The End!