Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015093.1 Corchorus olitorius cultivar O-4 contig15126, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82910

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10713--10776
32
2.0
32
87
6
94
18
15
23
42
1.89
12824--12865
22
1.9
22
100
0
84
23
7
9
59
1.53
14871--14908
2
19.0
2
100
0
76
50
0
0
50
1.00
21410--21444
16
2.2
16
94
0
61
40
34
14
11
1.82
22098--22256
85
1.9
85
92
2
266
52
1
12
33
1.47
26751--26805
21
2.5
22
88
2
76
45
7
7
40
1.60
26752--26929
22
8.3
21
70
11
69
34
14
7
43
1.74
29587--29651
27
2.3
28
82
17
82
44
0
7
47
1.31
35032--35067
17
2.1
17
89
0
54
36
19
11
33
1.87
35083--35146
27
2.4
27
82
15
80
31
23
12
32
1.92
49253--49322
35
2.0
35
100
0
140
17
14
28
40
1.88
50682--51500
46
18.3
46
80
10
849
34
17
20
27
1.95
50682--51445
129
5.7
131
77
14
610
34
17
20
28
1.95
50700--51499
221
3.6
220
92
3
1291
34
17
20
27
1.95
51233--51489
129
2.0
127
90
1
406
33
18
21
27
1.96
51651--51782
36
3.7
36
83
0
156
28
22
25
22
1.99
51937--52024
31
2.8
32
87
5
126
32
17
22
27
1.96
52033--52200
51
3.3
51
88
0
192
35
14
25
25
1.93
52187--52277
30
3.0
30
93
3
148
28
18
31
20
1.97
52264--52410
44
3.6
44
75
17
161
31
20
21
26
1.98
52570--52641
19
3.6
19
71
14
63
27
34
18
19
1.95
52610--52672
31
2.0
31
100
0
126
28
36
19
15
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52767--52920
53
2.9
53
93
0
254
31
29
16
22
1.95
52815--52908
25
3.6
25
73
8
89
30
30
17
21
1.96
52838--52883
14
3.3
14
84
0
56
36
32
13
17
1.88
53329--53541
110
1.9
110
95
1
383
32
22
22
23
1.98
57765--57857
45
2.1
45
83
0
114
37
6
18
37
1.76
79038--79067
2
15.5
2
93
6
53
50
0
0
50
1.00

Tables:   1

The End!