Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015098.1 Corchorus olitorius cultivar O-4 contig15131, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60102

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11871--11967
27
3.7
26
87
6
133
14
20
25
39
1.91
13784--13814
2
15.5
2
100
0
62
51
0
0
48
1.00
15398--15591
47
4.1
47
88
4
277
48
6
17
27
1.71
15398--15592
92
2.1
95
87
4
290
48
6
17
27
1.71
17037--17071
17
2.1
17
88
0
52
51
20
8
20
1.73
17875--18003
27
4.8
26
88
5
186
23
19
37
19
1.94
17875--18003
54
2.4
54
92
2
206
23
19
37
19
1.94
18048--18105
24
2.4
24
100
0
116
12
29
27
31
1.92
18858--18894
2
19.0
2
94
5
67
48
0
0
51
1.00
19327--19358
2
16.0
2
100
0
64
0
0
50
50
1.00
23112--23505
163
2.4
161
81
4
457
31
20
17
30
1.96
32977--33060
1
84.0
1
69
0
51
84
14
1
0
0.68
32976--33057
5
16.0
5
82
9
87
82
15
1
0
0.72
32976--33058
10
8.0
10
80
11
96
83
15
1
0
0.72
32977--33058
6
14.7
6
85
11
88
84
14
1
0
0.69
33666--33727
33
2.0
30
81
15
72
40
1
6
51
1.37
35475--35529
15
3.6
15
73
22
51
27
0
9
63
1.24
35475--35516
18
2.3
19
91
4
68
23
0
9
66
1.21
37277--37333
22
2.6
23
72
13
57
50
1
1
45
1.22
37316--37405
15
5.8
15
70
13
58
60
3
0
36
1.14
37316--37401
25
3.2
27
79
15
90
59
3
0
37
1.15
37317--37404
7
13.4
7
72
20
50
59
3
0
37
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37412--37455
16
2.6
17
82
13
56
56
13
2
27
1.49
37458--37508
19
2.8
19
82
5
61
58
3
0
37
1.16
41795--41831
19
2.0
19
94
5
67
32
0
0
67
0.91
41801--41842
19
2.2
19
86
0
57
38
2
0
59
1.10
44065--44122
22
2.6
23
81
10
75
39
12
8
39
1.73
47486--47561
28
2.7
29
89
2
109
15
21
27
35
1.94
47833--47883
26
2.0
26
84
0
66
60
1
19
17
1.45
55650--55726
26
2.9
26
84
5
84
38
24
12
23
1.90
58864--58904
21
1.9
22
90
5
66
24
31
9
34
1.88

Tables:   1

The End!