genome.fa.s15099.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015099.1 Corchorus olitorius cultivar O-4 contig15132, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64892

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333--474	74	1.9	72	85	5	196	38	10	19	32	1.86
1934--2121	50	3.7	50	83	5	245	35	18	14	32	1.91
2775--2995	50	4.4	50	94	0	388	32	27	12	28	1.92
3023--3253	50	4.6	50	91	1	356	35	10	25	28	1.89
3611--3686	28	2.7	29	83	2	91	17	19	26	36	1.94
19540--19590	18	2.8	18	96	3	93	62	9	17	9	1.52
20192--20227	19	1.9	18	88	5	54	27	22	8	41	1.82
20660--20697	15	2.5	15	95	0	67	42	18	15	23	1.89
27534--27580	24	2.0	24	95	0	85	23	27	4	44	1.72
32697--32751	27	2.0	28	85	3	76	18	18	18	45	1.86
32933--33514	289	2.0	289	97	0	1110	34	18	20	26	1.96
33528--33574	23	2.0	23	84	8	60	48	14	21	14	1.80
36431--36523	22	4.2	22	82	10	118	54	3	27	13	1.55
36431--36523	44	2.1	44	90	7	145	54	3	27	13	1.55
36522--36719	57	3.5	56	89	3	297	49	5	19	25	1.70
36711--36775	22	3.0	22	88	0	103	58	3	24	13	1.50
36852--36919	22	3.1	22	80	6	84	60	5	22	11	1.52
36957--37128	22	7.9	22	79	3	161	54	5	26	13	1.61
40576--40619	22	2.0	22	86	8	63	40	13	4	40	1.65
40619--41193	22	26.3	22	69	12	217	35	15	10	39	1.81
40764--40883	45	2.7	45	79	6	120	40	17	10	31	1.84
40904--41005	23	4.5	23	77	3	100	40	15	8	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41299--41657	22	16.3	22	70	15	165	35	16	9	38	1.81
41274--41467	44	4.4	44	74	10	157	35	12	9	41	1.77
41274--41437	88	1.9	88	83	7	217	35	13	10	40	1.79
41697--41836	22	6.3	22	75	10	106	37	17	9	35	1.82
41732--41832	46	2.2	44	81	6	105	36	18	8	35	1.83
41801--41873	36	2.0	37	81	7	87	35	10	13	39	1.80
42043--42080	19	2.0	20	85	15	53	68	2	5	23	1.23
42094--42428	165	2.0	167	85	10	463	43	10	10	35	1.73
45943--45993	18	2.9	18	70	2	50	54	0	1	43	1.11
54574--54601	12	2.3	12	100	0	56	50	32	17	0	1.47
61204--61255	24	2.2	24	89	6	79	32	7	23	36	1.83

Tables:   1

The End!