Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015100.1 Corchorus olitorius cultivar O-4 contig15133, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3178
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32


Found at i:180 original size:13 final size:13

Alignment explanation


    Indices: 162--186  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        152 CTTGCCAAAA

                         
        162 AATAATTTTAAGC
          1 AATAATTTTAAGC

                        
        175 AATAATTTTAAG
          1 AATAATTTTAAG

        187 GTGGTAAAAA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.48, C:0.04, G:0.08, T:0.40


Consensus pattern (13 bp):   
AATAATTTTAAGC

Found at i:3057 original size:15 final size:16

Alignment explanation


    Indices: 3025--3058  Score: 52
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       3015 TCGAAGTATG

                            
       3025 GAGATCATTCCTTCCT
          1 GAGATCATTCCTTCCT

                  *         
       3041 GAGATCTTTCC-TCCT
          1 GAGATCATTCCTTCCT

               
       3056 GAG
          1 GAG

       3059 GCTGCTGACA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  15    7  0.41
  16   10  0.59

ACGTcount: A:0.18, C:0.29, G:0.18, T:0.35


Consensus pattern (16 bp):   
GAGATCATTCCTTCCT
Done.