genome.fa.s15109.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015109.1 Corchorus olitorius cultivar O-4 contig15142, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85636

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8--110	36	2.9	36	83	9	113	31	19	17	32	1.95
2960--2985	7	3.7	7	100	0	52	11	26	0	61	1.30
7583--7618	19	1.9	18	88	5	54	33	22	2	41	1.68
9021--9324	151	2.0	151	100	0	608	29	29	4	36	1.77
12039--12074	18	1.9	19	88	5	56	2	13	19	63	1.41
12655--12930	34	8.2	34	88	3	416	46	0	19	33	1.53
12653--12935	67	4.2	67	93	1	478	47	0	19	32	1.53
12655--12935	135	2.1	134	93	2	492	47	0	19	32	1.53
12916--13130	18	11.8	18	68	18	124	48	1	17	32	1.58
12882--13051	52	3.3	51	94	1	295	46	1	18	33	1.57
12961--13046	27	3.3	26	69	18	79	44	1	19	34	1.59
12967--13182	70	3.2	70	83	11	315	48	1	17	32	1.56
13032--13112	43	1.9	43	89	2	128	53	1	16	29	1.51
13016--13153	61	2.2	61	96	2	249	49	1	17	31	1.56
13098--13220	52	2.3	52	90	4	194	47	0	19	32	1.55
13111--13202	25	3.6	24	70	17	71	47	1	20	30	1.57
12976--13240	131	2.0	128	80	8	293	49	0	18	31	1.53
16701--17392	49	15.0	44	66	15	227	33	17	22	26	1.96
16701--17416	93	7.7	93	87	2	976	33	17	22	25	1.96
16701--17416	187	3.9	187	87	2	962	33	17	22	25	1.96
16701--17413	280	2.6	279	88	1	1004	34	17	22	25	1.96
17200--17416	49	4.6	49	71	15	172	36	17	20	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17406--17703	38	7.9	37	82	8	343	32	15	16	34	1.91
17406--17704	76	4.0	76	86	4	394	32	15	16	35	1.90
17785--17862	27	2.9	27	80	0	93	24	17	35	21	1.95
17813--17967	62	2.5	62	81	6	197	29	18	31	21	1.96
18869--18925	2	28.5	2	96	0	105	0	47	0	52	1.00
29234--29951	55	13.1	54	89	3	1062	29	18	5	46	1.72
29234--29951	109	6.6	109	89	3	1068	29	18	5	46	1.72
49872--49951	33	2.4	33	76	2	88	2	35	41	21	1.66
50066--50120	22	2.6	21	78	16	60	7	27	43	21	1.79
57429--57490	31	2.0	31	100	0	124	35	16	29	19	1.93
67741--68066	30	10.8	30	86	5	376	47	17	13	21	1.81
67706--68066	60	5.9	60	87	4	447	46	17	13	21	1.83
67741--68066	121	2.7	122	89	2	489	47	17	13	21	1.81
68304--68349	19	2.4	20	75	7	51	41	10	10	36	1.75
68143--68882	169	4.4	169	90	0	1088	36	16	19	28	1.93
69041--69178	70	2.0	70	98	0	267	36	16	23	23	1.94
70429--70471	18	2.2	20	88	8	63	2	25	0	72	0.97
70778--70811	13	2.5	13	90	4	50	11	2	8	76	1.12
70776--70830	15	3.6	16	75	22	55	10	1	7	80	0.99
70776--70840	17	4.4	14	80	19	71	12	1	6	80	0.97
70776--70840	30	2.2	30	83	8	80	12	1	6	80	0.97
70792--70836	17	2.7	17	89	3	74	13	0	4	82	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71226--71258	14	2.2	16	89	10	52	12	15	0	72	1.12
79260--79285	7	3.7	7	100	0	52	61	11	11	15	1.57

Tables:   1

The End!