Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015111.1 Corchorus olitorius cultivar O-4 contig15144, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20653

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
799--845
13
3.8
12
78
13
51
40
0
4
55
1.19
970--1002
17
1.9
17
93
0
57
27
51
18
3
1.60
995--1087
16
5.8
16
75
14
102
39
37
13
8
1.76
995--1084
32
2.8
32
93
0
144
37
38
14
8
1.77
3276--3321
15
2.8
16
83
12
58
34
0
15
50
1.44
3272--3316
15
2.8
16
86
6
65
35
0
13
51
1.41
4312--4360
22
2.2
22
85
0
62
42
14
4
38
1.64
7106--7426
41
7.6
43
84
7
424
42
26
9
21
1.83
7106--7426
84
3.8
84
92
1
536
42
26
9
21
1.83
18351--18436
35
2.5
35
81
5
102
20
34
13
30
1.92
18351--18448
35
2.8
33
76
11
88
18
32
18
30
1.95
18724--19065
72
4.8
72
87
1
481
20
26
21
32
1.97
18722--19065
144
2.4
144
90
1
548
20
26
21
32
1.97
19702--19734
16
2.1
16
94
0
57
33
24
21
21
1.97
20270--20598
41
7.8
43
83
7
415
42
25
10
21
1.85
20270--20598
84
3.9
84
91
2
527
42
25
10
21
1.85

Tables:   1

The End!