Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015114.1 Corchorus olitorius cultivar O-4 contig15147, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2989
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.27


Found at i:511 original size:27 final size:28

Alignment explanation


    Indices: 461--513  Score: 74
    Period size: 28  Copynumber: 1.9  Consensus size: 28

        451 AAATCAATTA

                           *            
        461 GAAATCATAAAAACATAAAGATAAATCT
          1 GAAATCATAAAAACACAAAGATAAATCT

                                       
        489 GAAATCATAAAATAC-CAAA-ATAAAT
          1 GAAATCATAAAA-ACACAAAGATAAAT

        514 AATCAGATTA


Statistics
Matches: 23,  Mismatches: 1, Indels: 3
        0.85            0.04        0.11

Matches are distributed among these distances:
  27    6  0.26
  28   15  0.65
  29    2  0.09

ACGTcount: A:0.62, C:0.11, G:0.06, T:0.21


Consensus pattern (28 bp):   
GAAATCATAAAAACACAAAGATAAATCT
Done.