Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015122.1 Corchorus olitorius cultivar O-4 contig15155, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16788

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
584--1593
39
25.9
39
90
1
1571
32
15
16
35
1.91
1654--1775
33
3.8
31
77
10
120
23
26
13
36
1.91
4110--4141
2
16.0
2
100
0
64
50
0
0
50
1.00
4143--4167
2
12.5
2
100
0
50
0
0
48
52
1.00
5752--5917
35
4.7
35
83
5
201
28
16
18
36
1.93
14277--14306
14
2.1
15
93
6
53
13
16
6
63
1.50
15517--15552
14
2.4
16
90
9
58
11
44
38
5
1.63
15577--15624
21
2.3
21
96
0
87
16
33
29
20
1.95
16274--16456
28
6.4
28
82
5
197
17
17
26
38
1.92
16274--16456
58
3.2
55
78
9
206
17
17
26
38
1.92

Tables:   1

The End!