Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015123.1 Corchorus olitorius cultivar O-4 contig15156, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12306
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27


Found at i:1567 original size:30 final size:30

Alignment explanation


    Indices: 1532--1604  Score: 85
    Period size: 30  Copynumber: 2.4  Consensus size: 30

       1522 TCATTTTTTT

                                           
       1532 CAATTT-AGGCTTAATATTACTGGATTGTTG
          1 CAATTTGAGGCTTAATA-TACTGGATTGTTG

                        ***      *    *   
       1562 CAATTTGAGGCTGGTTATACTTGATTTTTG
          1 CAATTTGAGGCTTAATATACTGGATTGTTG

                         
       1592 CAATTTGAGGCTT
          1 CAATTTGAGGCTT

       1605 GTTTGGATGT


Statistics
Matches: 36,  Mismatches: 6, Indels: 2
        0.82            0.14        0.05

Matches are distributed among these distances:
  30   29  0.81
  31    7  0.19

ACGTcount: A:0.23, C:0.11, G:0.22, T:0.44


Consensus pattern (30 bp):   
CAATTTGAGGCTTAATATACTGGATTGTTG

Found at i:2355 original size:12 final size:12

Alignment explanation


    Indices: 2338--2365  Score: 56
    Period size: 12  Copynumber: 2.3  Consensus size: 12

       2328 GGTAATTTCA

                        
       2338 AATTTCAAAGGT
          1 AATTTCAAAGGT

                        
       2350 AATTTCAAAGGT
          1 AATTTCAAAGGT

                
       2362 AATT
          1 AATT

       2366 AATTAATTTC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   16  1.00

ACGTcount: A:0.43, C:0.07, G:0.14, T:0.36


Consensus pattern (12 bp):   
AATTTCAAAGGT
Done.