genome.fa.s15124.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015124.1 Corchorus olitorius cultivar O-4 contig15157, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54328

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
427--474	25	1.9	25	95	0	87	39	10	18	31	1.85
618--693	29	2.7	29	85	4	102	38	26	14	21	1.91
7771--7809	2	19.5	2	94	0	69	46	0	2	51	1.14
10227--10313	31	2.8	31	87	1	113	20	36	24	18	1.95
10760--10797	11	3.5	11	89	10	51	39	0	2	57	1.12
11257--11314	19	2.9	19	87	5	80	29	22	12	36	1.90
11692--11725	13	2.5	14	90	4	52	52	2	17	26	1.58
12098--12145	23	2.1	23	100	0	96	37	27	4	31	1.76
14285--14317	17	1.9	17	93	0	57	42	21	9	27	1.83
14281--14464	22	8.5	21	70	15	99	36	15	9	37	1.81
14302--14464	22	7.3	22	72	13	109	36	15	9	38	1.80
15176--15227	24	2.2	23	83	13	61	30	3	1	63	1.23
36191--36230	15	2.6	16	88	4	55	62	12	10	15	1.54
38122--38229	31	3.5	30	73	16	114	32	19	18	29	1.96
38126--38259	61	2.2	60	92	2	223	32	19	18	29	1.96
38157--38258	29	3.4	29	69	21	84	32	18	19	29	1.96
38300--38462	60	2.7	60	85	1	229	26	18	17	36	1.93
38330--38430	29	3.4	29	65	20	73	27	19	17	34	1.95
48485--48578	27	3.4	27	80	4	100	38	25	18	18	1.93
52591--52630	21	2.1	19	86	13	55	20	27	15	37	1.92
52835--52883	24	2.0	24	100	0	98	4	28	4	63	1.31
53034--53062	15	1.9	15	100	0	58	20	13	31	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53279--53316	20	1.9	20	89	10	60	28	10	15	44	1.80
54079--54110	13	2.3	15	89	10	50	0	18	0	81	0.70

Tables:   1

The End!