Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015129.1 Corchorus olitorius cultivar O-4 contig15162, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24600

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
628--704
28
2.7
28
86
6
93
44
24
14
16
1.85
6511--6550
8
5.0
8
87
0
62
32
25
5
37
1.77
6511--6550
16
2.5
16
100
0
80
32
25
5
37
1.77
8729--8838
32
3.4
31
78
9
87
28
14
25
31
1.95
8750--8870
64
1.9
65
81
11
151
30
16
22
30
1.96
8750--8870
32
3.8
32
78
10
104
30
16
22
30
1.96
8781--8885
32
3.3
32
78
11
83
34
18
19
28
1.95
11974--12005
1
32.0
1
93
0
55
0
3
0
96
0.20
11974--12004
16
1.9
16
100
0
62
0
3
0
96
0.21
12549--12607
31
1.9
30
82
3
73
28
18
20
32
1.96
14402--14557
64
2.4
64
92
0
258
41
10
7
40
1.68
21784--21813
15
1.9
16
93
6
53
20
6
6
66
1.38
22205--22268
30
2.2
28
83
5
74
51
7
10
29
1.65

Tables:   1

The End!