Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015133.1 Corchorus olitorius cultivar O-4 contig15166, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61913

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
831--943
58
1.9
58
89
3
174
31
14
20
33
1.92
2681--2728
12
3.8
12
75
8
51
10
41
39
8
1.69
2677--2815
24
5.8
24
72
10
88
11
39
40
8
1.72
2697--2801
36
2.9
36
94
0
183
12
41
39
6
1.69
2743--2818
12
6.4
12
73
7
57
9
38
42
10
1.71
5666--5735
36
1.9
36
91
0
113
21
10
8
60
1.55
6246--6657
207
2.0
200
90
4
646
44
7
11
36
1.69
6786--6846
18
3.2
18
70
9
50
36
1
6
55
1.36
7066--7120
2
26.5
2
78
7
56
47
0
10
41
1.39
8984--9241
123
2.1
124
92
3
439
42
10
10
36
1.74
9498--9538
12
3.3
12
86
6
55
29
17
12
41
1.85
11726--11800
36
2.1
37
85
7
100
53
5
34
6
1.50
13933--13975
22
1.9
23
85
4
61
27
25
13
32
1.94
14066--14118
26
2.0
26
100
0
106
18
7
18
54
1.67
15722--15827
54
2.0
54
90
0
167
31
22
17
28
1.97
22265--22316
27
2.0
25
85
10
70
36
5
9
48
1.60
34818--34848
1
31.0
1
100
0
62
0
0
0
100
0.00
39888--39912
11
2.3
11
100
0
50
32
16
8
44
1.76
42891--43082
69
2.8
69
99
0
375
31
16
19
32
1.94
42891--43139
138
1.8
138
80
6
308
32
15
21
30
1.94
45264--45460
66
3.0
66
85
2
238
32
18
22
25
1.97
55643--55747
52
2.0
54
90
5
169
31
17
19
32
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57703--57732
15
1.9
16
93
6
53
43
0
3
53
1.17
57870--58033
59
2.8
60
89
5
253
34
19
19
26
1.96
57931--58032
31
3.4
31
71
15
113
36
18
19
25
1.95
58077--58238
31
5.4
31
65
19
108
27
16
19
36
1.93
58070--58234
60
2.8
60
84
3
233
27
16
19
36
1.94
58486--61784
328
10.0
329
76
8
2373
34
14
14
36
1.87
58514--61564
654
4.6
646
74
10
2083
34
14
14
36
1.87
61773--61798
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1

The End!