Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015134.1 Corchorus olitorius cultivar O-4 contig15167, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40890

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97--142
24
1.9
24
90
0
74
21
26
28
23
1.99
703--733
16
1.9
16
93
0
53
0
6
19
74
1.03
6353--6569
106
2.0
108
89
6
332
26
12
16
44
1.84
17391--17444
25
2.2
25
96
0
99
37
18
20
24
1.94
17401--17472
26
2.9
24
81
6
72
37
20
19
22
1.94
28834--28906
31
2.4
30
86
4
94
38
17
16
27
1.91
28850--28928
31
2.5
31
95
0
140
32
13
22
30
1.93
31311--31449
48
2.9
48
91
0
224
33
23
18
24
1.97
33159--33349
106
1.8
102
88
6
294
30
16
15
37
1.89
33719--33814
47
2.1
47
94
2
167
37
17
8
36
1.80
36452--36583
64
2.1
63
92
4
221
52
7
12
28
1.65

Tables:   1

The End!